SYSUCC Sun Yat-sen University Cancer Center


In Press

[] ♦ Qin J, Huang X, Gou S, Zhang S, Gou Y, Zhang Q, Chen H, Sun L, Chen M, Liu D, Han C, Tang M, Feng Z, Niu S, Zhao L, Tu Y, Liu Z, Xuan W, Dai L, Jia D, Xue Y. Ketogenic diet reshapes cancer metabolism through lysine β-hydroxybutyrylation. Nature Metabolism, 2024, Accepted. (PMID: In press)
[] ♦ Luo X, Lu Y, Wang Y, Huang R, Liu J, Jin Y, Liu Z, Liu Z, Huang Q, Pu H, Zeng Z, Xu R, Zhao Q, Wu Q. M6A-modified lncRNA FAM83H-AS1 promotes colorectal cancer progression through PTBP1. Cancer Letters, 2024, 217085. (PMID: 38964733)


[139] ♦ Xie R, Cao B, Wu Z, Ouyang Y, Chen H, Zhai W, Liu Z, Xu M, Guo G. dbEBV: A database of Epstein-Barr virus variants and their correlations with human health. Computational and Structural Biotechnology Journal, 2024, 23:2076-2082. (PMID: 38803518)
[138] ♦ Qian Z, Pan Y, Li X, Chen Y, Wu H, Liu Z, Kosar M, Bartek J, Wang Z, Xu R. Modulator of TMB-associated immune infiltration (MOTIF) predicts immunotherapy response and guides combination therapy. Science Bulletin, 2024, 69(6):803-822. (PMID: 38320897)
[137] ♦ Liang T, Chen H, Liu L, Zheng Y, Ma Z, Min L, Zhang J, Wu L, Ma J, Liu Z, Zhang Q, Luo K, Hu D, Ji T, Yu X. Antibody Profiling of Pan-Cancer Viral Proteome Reveals Biomarkers for Nasopharyngeal Carcinoma Diagnosis and Prognosis. Molecular & Cellular Proteomics, 2024, 23(3):100729. (PMID: 38309569)
[136] ♦ Liu D, Cao F, Xu Z, Zhao C, Liu Z, Pang J, Liu Z, Moghiseh M, Butler A, Liang S, Fan W, Yang J. Selective Organ-Targeting Hafnium Oxide Nanoparticles with Multienzyme-Mimetic Activities Attenuate Radiation-Induced Tissue Damage. Advanced Materials, 2023, 36(19):e2308098. (PMID: 37777858)
[135] ♦ Guo G, Li J, Zheng Y, Liu Z, Lin H. Breast-conserving surgery is associated with a lower incidence of suicide among females with breast cancer in the United States: A population-based retrospective cohort study. International Journal of Surgery, 2024, 110(3):1392-1401. (PMID: 38215250)
[134] ♦ Wu Q, Qi J, Liu Z, Luo X, Yu K, Lu Y, Wang Y, Jin Y, Liu J, Huang L, Zeng Z, Zheng Y, Xu R, Liu Z. HIPK3 maintains sensitivity to platinum drugs and prevents disease progression in gastric cancer. Cancer Letters, 2024, 216643. (PMID: 38246220)


[133] ♦ Yuan S, Nie R, Huang Y, Chen Y, Wang S, Sun X, Li Y, Liu Z, Chen Y, Yao Y, Xu Y, Qiu H, Liang Y, Wang W, Liu Z, Zhao Q, Xu R, Zhou Z, Wang F. Residual circulating tumor DNA after adjuvant chemotherapy effectively predicts recurrence of stage II-III gastric cancer. Cancer Communications, 2023, 43(12):1312-1325. (PMID: 37837629)
[132] ♦ Zheng Y, Pan Y, Liao K, Yu K, Wu Q, Chen Y, Deng Y, Sun H, Pu H, Ju H, Xu R, Liu Z. Pan-cancer landscape of tumour endothelial cells pinpoints insulin receptor as a novel antiangiogenic target and predicts immunotherapy response. Clinical and Translational Medicine, 2023, 13(12):e1501. (PMID: 38037528)
[131] ♦ Li J, Wang J, Tian T, Liu J, Zheng Y, Mo H, Sheng H, Chen Y, Wu Q, Han Y, Liao K, Pan Y, Zeng Z, Liu Z, Yang W, Xu R, Ju H. The liver microenvironment orchestrates FGL1-mediated immune escape and progression of metastatic colorectal cancer. Nature Communications, 2023, 14(1):6690. (PMID: 37872170)
[130] ♦ Qiu M, Wang C, Wu Z, Zhao Q, Zhao Z, Huang C, Wu W, Yang L, Zhou Z, Zheng Y, Pan H, Liu Z, Zeng Z, Luo H, Wang F, Wang F, Yang S, Huang M, Lian Z, Zhang H, Xu R. Dynamic single-cell mapping unveils Epstein‒Barr virus-imprinted T-cell exhaustion and on-treatment response. Signal Transduction and Targeted Therapy, 2023, 8(1):370. (PMID: 37735150)
[129] ♦ Liu J, Zhou W, Luo X, Chen Y, Wong C, Liu Z, Zheng J, Mo H, Chen J, Li J, Zhong M, Xu Y, Zhang Q, Pu H, Wu Q, Jin Y, Wang Z, Xu R, Luo H. Long noncoding RNA Regulating ImMune Escape regulates mixed lineage leukaemia protein-1-H3K4me3-mediated immune escape in oesophageal squamous cell carcinoma. Clinical and Translational Medicine, 2023, 13(9):e1410. (PMID: 37712124)
[128] ♦ Pang J, Zhu D, Liu Y, Liu D, Zhao C, Zhang J, Li S, Liu Z, Li X, Huang P, Wen S, Yang J. A Cyclodiaryliodonium NOX Inhibitor for the Treatment of Pancreatic Cancer via Enzyme-Activatable Targeted Delivery by Sulfated Glycosaminoglycan Derivatives. Advanced Healthcare Materials, 2023, 12(17):e2203011. (PMID: 36841552)
[127] ♦ Zhao G, Luo T, Liu Z, Li J. Development and validation of focal adhesion-related genes signature in gastric cancer. Frontiers in Genetics, 2023, 14:1122580. (PMID: 36968601)
[126] ♦ Li X, Zhou Y, Jiang Q, Huang J, Liu Z, Li Y, Guo G. A novel scoring model based on RNA modification "writers" can predict the prognosis and guide immunotherapy in gastric cancer. Functional & Integrative Genomics, 2023, 23(2):162. (PMID: 37188931)
[125] ♦ Xu L, Wang D, Zhao L, Yang Z, Liu X, Li X, Yuan T, Wang Y, Huang T, Bian N, He Y, Chen X, Tian B, Liu Z, Luo F, Si W, Gao G, Ji W, Niu Y, Wei J. C9orf72 poly(PR) aggregation in nucleus induces ALS/FTD-related neurodegeneration in cynomolgus monkeys. Neurobiology of Disease, 2023, 184:106197. (PMID: 37328037)
[124] ♦ Hong Y, Yuan Y, Liu Z, Liu Z, Zhang Y. A Pan-Cancer Analysis of Prognostic and Immunological Roles for Cell Death Genes. Genes (Basel), 2023, 14(6):1178. (PMID: 37372358)
[123] ♦ Hu J, Huang R, Liang C, Wang Y, Wang M, Chen Y, Wu C, Zhang J, Liu Z, Zhao Q, Liu Z, Wang F, Yuan S. TRIM50 Inhibits Gastric Cancer Progression by Regulating the Ubiquitination and Nuclear Translocation of JUP. Molecular Cancer Research, 2023, 21(10):1107-1119. (PMID: 37409971)
[122] ♦ Liu Z#, Wang P#, Zhang Q#, Li S, Zhang Y, Guo Y, Jia C, Shao T, Li L, Cheng H, Wang Z. iHypoxia: An Integrative Database of Protein Expression Dynamics in Response to Hypoxia in Animals. Genomics, Proteomics & Bioinformatics, 2023, 21(2):267-277. (PMID: 36503126)
[121] ♦ Yuan J, Zhang Y, Hua X, Hong H, Shi W, Liu K, Liu Z, Huang P. Genetically predicted vitamin C levels significantly affect patient survival and immunotypes in multiple cancer types. Frontiers in Immunology, 2023, 14:1177580. (PMID: 37283769)
[120] ♦ Han Y, Zhang Y, Pan Y, Zheng X, Liao K, Mo H, Sheng H, Wu Q, Liu Z, Zeng Z, Yang W, Yuan S, Huang P, Ju H, Xu R. IL-1β-associated NNT acetylation orchestrates iron-sulfur cluster maintenance and cancer immunotherapy resistance. Molecular Cell, 2023, 83(11):1887-1902.e8. (PMID: 37244254)
[119] ♦ Chen Y, Wang Z, Jin Y, Zhao Q, Liu Z, Zuo Z, Ju H, Cui C, Yao J, Zhang Y, Li M, Feng J, Tian L, Xia X, Feng H, Yao S, Wang F, Li Y, Wang F, Xu R. An immunogenic and oncogenic feature-based classification for chemotherapy plus PD-1 blockade in advanced esophageal squamous cell carcinoma. Cancer Cell, 2023, 41(5):919-932.e5. (PMID: 37059106)
[118] ♦ Liu J#, Liu Z#, Li J, Zeng Z, Wang J, Luo X, Wong C, Zheng J, Pu H, Mo H, Sheng H, Wu Q, Li H, Wan G, Li B, Wang D, Xu R, Ju H. The macrophage-associated lncRNA MALR facilitates ILF3 liquid-liquid phase separation to promote HIF1α signaling in esophageal cancer. Cancer Research, 2023, 83(9):1476-1489. (PMID: 36264156)
[117] ♦ Zhang X#, Liu Z#, , Zhang Y#, Xu L, Chen M, Zhou Y, Yu J, Li X, Zhang N. SEPT2 crotonylation promotes metastasis and recurrence in hepatocellular carcinoma and is associated with poor survival. Cell & Bioscience, 2023, 13(1):63. (PMID: 36949517)
[116] ♦ Zhang X, Cheng L, Gao C, Chen J, Liao S, Zheng Y, Xu L, He J, Wang D, Fang Z, Zhang J, Yan M, Luan Y, Chen S, Chen LK, Xia X, Deng C, Chen G, Li W, Liu Z, Zhou P. Androgen Signaling Contributes to Sex Differences in Cancer by Inhibiting NF-κB Activation in T Cells and Suppressing Anti-Tumor Immunity. Cancer Research, 2023, 83(6):906-921. (PMID: 36634207)
[115] ♦ Zhao C, Liu Z, Chang C, Chen Y, Zhang Q, Zhang X, Andreou C, Pang J, Liu Z, Wang D, Kircher MF, Yang J. Near-Infrared Phototheranostic Iron Pyrite Nanocrystals Simultaneously Induce Dual Cell Death Pathways via Enhanced Fenton Reactions in Triple-Negative Breast Cancer. ACS Nano, 2023, 17(5):4261-4278. (PMID: 36706095)
[114] ♦ Cheng R, Li F, Zhang M, Xia X, Wu J, Gao X, Zhou H, Zhang Z, Huang N, Yang X, Zhang Y, Shen S, Kang T, Liu Z, Xiao F, Yao H, Xu J, Yan C, Zhang N. A novel protein RASON encoded by a lncRNA controls oncogenic RAS signaling in KRAS mutant cancers. Cell Research, 2023, 33(1):30-45. (PMID: 36241718)
[113] ♦ Yu K, Liu Z, Cheng H, Li S, Zhang Q, Liu J, Ju H, Zuo Z, Zhao Q, Kang S, Liu Z. dSCOPE: a software to detect sequences critical for liquid-liquid phase separation. Briefings in Bioinformatics, 2023, 24(1):bbac550. (PMID: 36528388)
[112] ♦ Yu K, Wang Y, Zheng Y, Liu Z, Zhang Q, Wang S, Zhao Q, Zhang X, Li X, Xu R, Liu Z. qPTM: an updated database for PTM dynamics in human, mouse, rat and yeast. Nucleic Acids Research, 2023, 51(D1):D479-D487. (PMID: 36165955)


[111] ♦ Liu X, Zheng Y, Xiao M, Chen X, Zhu Y, Xu C, Wang F, Liu Z, Cao K. SRSF10 stabilizes CDC25A by triggering exon 6 skipping to promote hepatocarcinogenesis. Journal of Experimental & Clinical Cancer Research, 2022, 41(1):353. (PMID: 36539837)
[110] ♦ Wang Y, Ruan D, Wang Z, Yu K, Rong D, Liu Z, Wang F, Hu J, Jin Y, Wu Q, Pu H, Wang M, Xu R, Zeng Z. Targeting the cholesterol-RORα/γ axis inhibits colorectal cancer progression through degrading c-myc. Oncogene, 2022, 41(49):5266-5278. (PMID: 36316442)
[109] ♦ Liu Z#, Zhang X#, Zhao Q#, Chen Y, Sheng H, He C, Sun Y, Lai M, Wu M, Zuo Z, Wang W, Zhou Z, Wang F, Li Y, Xu R, Qiu M. Whole-exome sequencing among Chinese patients with hereditary diffuse gastric cancer. JAMA Network Open, 2022, 5(12):e2245836. (PMID: 36484990)
[108] ♦ Zhang X, Qian Z, Wang Y, Zhang Q, Yu K, Zheng Y, Liu Z, Zhao Q, Liu Z. DrugCVar: a platform for evidence-based drug annotation for genetic variants in cancer. Bioinformatics, 2022, 38(11):3094-3098. (PMID: 35426945)
[107] ♦ Chen L, Zheng Y, Yu K, Chen S, Wang W, Gale RP, Liu Z, Liang Y. Changing causes of death in persons with haematological cancers 1975-2016. Leukemia, 2022, 36(7):1850-1860. (PMID: 35577905)
[106] ♦ Liang J, Li Z, Yue C, Hu Z, Cheng H, Liu Z, Guo W. Multi-modal optimization to identify personalized biomarkers for disease prediction of individual patients with cancer. Briefings in Bioinformatics, 2022, 23(5):bbac254. (PMID: 35858208)
[105] ♦ Luo X, He M, Liu J, Zheng J, Wu Q, Chen Y, Meng Q, Luo K, Chen D, Xu R, Zeng Z, Liu Z, Luo H. LncRNA TMPO-AS1 promotes esophageal squamous cell carcinoma progression by forming biomolecular condensates with FUS and p300 to regulate TMPO transcription. Experimental & Molecular Medicine, 2022, 54(6):834-847. (PMID: 35760875)
[104] ♦ Xu Y, Lei B, Zhang Q, Lei Y, Li C, Li X, Yao R, Hu R, Liu K, Wang Y, Cui Y, Wang L, Dai J, Li L, Ni W, Zhou P, Liu Z, Hu S. ADDAGMA: A database for domestic animal gut microbiome atlas. Computational and Structural Biotechnology Journal, 2022, 20: 891–898. (PMID: 35222847)
[103] ♦ Zhang W, Chen S, Du Q, Bian P, Chen Y, Liu Z, Zheng J, Sai K, Mou Y, Chen Z, Fan X, Jiang X. CircVPS13C promotes pituitary adenoma growth by decreasing the stability of IFITM1 mRNA via interacting with RRBP1. Oncogene, 2022, 41(11):1550-1562. (PMID: 35091683)
[102] ♦ Lin J, Hu P, Wang Y, Tan Y, Yu K, Liao K, Wu Q, Li T, Meng Q, Lin J, Liu Z, Pu H, Ju H, Xu R, Qiu M. Phosphorylated NFS1 weakens oxaliplatin-based chemosensitivity of colorectal cancer by preventing PANoptosis. Signal Transduction and Targeted Therapy, 2022, 7(1):54. (PMID: 35221331)
[101] ♦ Xiong W, He W, Wang T, He S, Xu F, Wang Z, Wang X, Guo H, Ling J, Zhang H, Liu Y, Xing K, Li M, Zhang H, Li J, Niu N, Xue J, Zhan Q, Liu Z, Bei J, Huang P, Liu J, Xia L, Xia X. Smad4 Deficiency Promotes Pancreatic Cancer Immunogenicity by Activating the Cancer-Autonomous DNA-Sensing Signaling Axis. Advanced Science, 2022, 9(7):e2103029. (PMID: 35064757)
[100] ♦ Xue H, Zhang Q, Wang P, Cao B, Jia C, Cheng B, Shi Y, Guo W, Wang Z, Liu Z, Cheng H. qPTMplants: an integrative database of quantitative post-translational modifications in plants. Nucleic Acids Research, 2022, 50(D1):D1491-D1499. (PMID: 34718741)
[99] ♦ Liu S#, Sun X#, Chen Q#, Liu Z#, Bian L#, Yuan L, Xiao B, Lu Z, Li X, Yan J, Yan S, Li J, Bei J, Mai H, Tang L. Development and validation of a transcriptomics-based gene signature to predict distant metastasis and guide induction chemotherapy in locoregionally advanced nasopharyngeal carcinoma. European Journal of Cancer, 2022, 163:26-34. (PMID: 35032814)


[98] ♦ Liu B, Zhang Q, Wang J, Cao S, Zhou Z, Liu Z, Cheng H. iCAV: an integrative database of cancer-associated viruses . Database, 2021, 2021(2021):baab079. (PMID: 34907423)
[97] ♦ Pan L, Huang X, Liu Z#, Ye Y, Li R, Zhang J, Wu G, Bai R, Zhuang L, Wei L, Li M, Zheng Y, Su J, Deng J, Deng S, Zeng L, Zhang S, Wu C, Che X, Wang C, Chen R, Lin D, Zheng J. Inflammatory cytokine-regulated tRNA-derived fragment tRF-21 suppresses pancreatic ductal adenocarcinoma progression. Journal of Clinical Investigation, 2021, 131(22):e148130. (PMID: 34779408)
[96] ♦ Li L, Bai L, Lin H, Dong L, Zhang R, Cheng X, Liu Z, Ouyang Y, Ding K. Multiomics analysis of tumor mutational burden across cancer types. Computational and Structural Biotechnology Journal, 2021, 19:5637-5646. (PMID: 34745455)
[95] ♦ Su J, Wu G, Ye Y, Zhang J, Zeng L, Huang X, Zheng Y, Bai R, Zhuang L, Li M, Pan L, Deng J, Li R, Deng S, Zhang S, Zuo Z, Liu Z, Lin J, Lin D, Zheng J. NSUN2-mediated RNA 5-methylcytosine promotes esophageal squamous cell carcinoma progression via LIN28B-dependent GRB2 mRNA stabilization. Oncogene, 2021, 40(39):5814-5828. (PMID: 34345012)
[94] ♦ Li W, Wang C, Tao L, Yan Y, Zhang M, Liu Z, Li Y, Zhao H, Li X, He X, Xue Y, Dong M. Insulin signaling regulates longevity through protein phosphorylation in Caenorhabditis elegans. Nature Communications, 2021, 12(1):4568. (PMID: 34315882)
[93] ♦ Ruan D, Li T, Wang Y, Meng Q, Li Y, Yu K, Wang M, Lin J, Luo L, Wang D, Lin J, Bai L, Liu Z, Zhao Q, Wu X, Ju H, Xu R. FTO downregulation mediated by hypoxia facilitates colorectal cancer metastasis. Oncogene, 2021, 40(33):5168-5181. (PMID: 34218271)
[92] ♦ Meng Q, Lu Y, Ruan D, Yu K, Chen Y, Xiao M, Wang Y, Liu Z, Xu R, Ju H, Qiu M. DNA methylation regulator-mediated modification patterns and tumor microenvironment characterization in gastric cancer. Molecular Therapy-Nucleic Acids, 2021, 24:695-710. (PMID: 33996253)
[91] ♦ Sui Q, Liu D, Jiang W, Tang J, Kong L, Han K, Liao L, Li Y, Ou Q, Xiao B, Liu G, Ling Y, Chen J, Liu Z, Zuo Z, Pan Z, Zhou P, Zheng J, Ding P. Dickkopf 1 impairs the tumor response to PD-1 blockade by inactivating CD8+ T cells in deficient mismatch repair colorectal cancer. Journal for ImmunoTherapy of Cancer, 2021, 9(3):e001498. (PMID: 33782107)
[90] ♦ Wu Q, Luo X, Liu J, Lu Y, Wang Y, Qi J, Liu Z, Huang Q, Liu Z, Lu J, Jin Y, Pu H, Hu P, Zheng J, Zeng Z, Ju H, Xie D, Zhao Q, Xu R. MYC-Activated LncRNA MNX1-AS1 Promotes the Progression of Colorectal Cancer by Stabilizing YB1. Cancer Research, 2021, 81(10):2636-2650. (PMID: 33782099)
[89] ♦ Zheng Y, Chen Y, Yu K, Yang Y, Wang X, Yang X, Qian J, Liu Z, Wu B. Fatal Infections Among Cancer Patients: A Population-Based Study in the United States. Infectious Diseases and Therapy, 2021, 10(2):871-895. (PMID: 33761114)
[88] ♦ Li S, Yu K, Wu G, Zhang Q, Wang P, Zheng J, Liu Z, Wang J, Gao X, Cheng H. pCysMod: Prediction of Multiple Cysteine Modifications Based on Deep Learning Framework. Frontiers in Cell and Developmental Biology, 2021, 9:617366. (PMID: 33732693)
[87] ♦ You X, Tian J, Zhang H, Guo Y, Yang J, Zhu C, Song M, Wang P, Liu Z, Cancilla J, Lu W, Glorieux C, Wen S, Du H, Huang P, Hu Y. Loss of mitochondrial aconitase promotes colorectal cancer progression via SCD1-mediated lipid remodeling. Molecular Metabolism, 2021, 48:101203. (PMID: 33676027)
[86] ♦ Zeng Z, Lu J, Wang Y, Sheng H, Wang Y, Chen Z, Wu Q, Zheng J, Chen Y, Yang D, Yu K, Mo H, Hu J, Hu P, Liu Z, Ju H, Xu R. The lncRNA XIST/miR-125b-2-3p axis modulates cell proliferation and chemotherapeutic sensitivity via targeting Wee1 in colorectal cancer. Cancer Medicine, 2021, 10(7):2423-2441. (PMID: 33666372)
[85] ♦ Que Y, Zhang X, Liu Z, Zhao J, Pan Q, Wen X, Xiao W, Xu B, Hong D, Guo T, Shen L, Fan W, Chen H, Weng D, Xu H, Zhou P, Zhang Y, Niu X, Zhang X. Frequent amplification of HDAC genes and efficacy of HDAC inhibitor chidamide and PD-1 blockade combination in soft tissue sarcoma. Journal for ImmunoTherapy of Cancer, 2021, 9(2):e001696. (PMID: 33637599)
[84] ♦ Wang P, Zhang Q, Li S, Cheng B, Xue H, Wei Z, Shao T, Liu Z, Cheng H, Wang Z. iCysMod: an integrative database for protein cysteine modifications in eukaryotes. Briefings in Bioinformatics, 2021, 22(5):bbaa400. (PMID: 33406221)
[83] ♦ Zhang Q, Yu K, Li S, Zhang X, Zhao Q, Zhao X, Liu Z, Cheng H, Liu Z, Li X. gutMEGA: a database of the human gut MEtaGenome Atlas. Briefings in Bioinformatics, 2020, 22(3):bbaa082. (PMID: 32496513)
[82] ♦ Huang N, Li F, Zhang M, Zhou H, Chen Z, Ma X, Yang L, Wu X, Zhong J, Xiao F, Yang X, Zhao K, Li X, Xia X, Liu Z, Gao S, Zhang N. An Upstream Open Reading Frame in Phosphatase and Tensin Homolog Encodes a Circuit Breaker of Lactate Metabolism. Cell Metabolism, 2021, 33(1):128-144.e9. (PMID: 33406399)
[81] ♦ Huang J, Chen P, Liu K, Liu J, Zhou B, Wu R, Peng Q, Liu Z, Li C, Kroemer G, Lotze M, Zeh H, Kang R, Tang D. CDK1/2/5 inhibition overcomes IFNG-mediated adaptive immune resistance in pancreatic cancer. Gut, 2021, 70(5):890-899. (PMID: 32816920)


[80] ♦ Jiang L, Wang YJ, Zhao J, Uehara M, Hou Q, Kasinath V, Ichimura T, Banouni N, Dai L, Li X, Greiner DL, Shultz LD, Zhang X, Sun ZJ, Curtin I, Vangos NE, Yeoh ZC, Geffken EA, Seo HS, Liu Z, Heffron GJ, Shah K, Dhe-Paganon S, Abdi R. Direct Tumor Killing and Immunotherapy through Anti-SerpinB9 Therapy. Cell, 2020, 183(5):1219-1233.e18. (PMID: 33242418)
[79] ♦ Zhao Q, Chen Y, Wu Q, Zhang C, Liu M, Wang Y, Feng Y, Hu J, Fu J, Yang H, Qi J, Wang Z, Lu Y, Sheng H, Liu Z, Zuo Z, Zheng J, Yun J, Bei J, Jia W, Lin D, Xu R, Wang F. Systematic analysis of the transcriptome in small-cell carcinoma of the oesophagus reveals its immune microenvironment. Clinical & Translational Immunology, 2020, 9(10): e1173. (PMID: 33033616)
[78] ♦ Yu K, Zhang Q, Liu Z, Du Y, Gao X, Zhao Q, Li X, Cheng H, Liu Z. Deep learning based prediction of reversible HAT/HDAC-specific lysine acetylation. Briefings in Bioinformatics, 2020, 21(5):1798-1805. (PMID: 32978618)
[77] ♦ Zhao Q, Sun Y, Liu Z, Zhang H, Li X, Zhu K, Liu Z, Ren J, Zuo Z. CrossICC: Iterative consensus clustering of cross-platform gene expression data without adjusting batch effect. Briefings in Bioinformatics, 2020, 21(5):1818-1824. (PMID: 32978617)
[76] ♦ Hu P, Li T, Lin J, Qiu M, Wang D, Liu Z, Chen Z, Yang L, Zhang X, Zhao Q, Chen Y, Lu Y, Wu Q, Pu H, Zeng Z, Xie D, Ju H, Luo H, Xu R. VDR-SOX2 signaling promotes colorectal cancer stemness and malignancy in an acidic microenvironment. Signal Transduction and Targeted Therapy, 2020, 5(1):183. (PMID: 32900990)
[75] ♦ Liu Z, Zhao Q, Zuo Z, Yuan S, Yu K, Zhang Q, Zhang X, Sheng H, Ju H, Cheng H, Wang F, Xu R, Liu Z. Systematic analysis of the aberrances and functional implications of ferroptosis in cancer. iScience, 2020, 23(7):101302. (PMID: 32629423)
[74] ♦ Luo T, Li Y, Nie R, Liang C, Liu Z, Xue Z, Chen G, Jiang K, Liu Z, Lin H, Li C, Chen Y. Development and validation of metabolism-related gene signature in prognostic prediction of gastric cancer. Computational and Structural Biotechnology Journal, 2020, 18: 3217-3229. (PMID: 33209209)
[73] ♦ Li S, Yu K, Wang D, Zhang Q, Liu Z, Zhao L, Cheng H. Deep learning based prediction of species-specific protein S-glutathionylation sites. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2020, 1868(7):140422. (PMID: 32234550)
[72] ♦ Liu S#, Bian L#, Liu Z#, Chen Q#, Sun X#, Sun R, Luo D, Li X, Xiao B, Yan J, Lu Z, Yan S, Yuan L, Tang L, Li J, Mai H. Development and Validation of the Immunoscore to Predict Distant Metastasis in Patients with Nasopharyngeal Carcinoma. Journal for ImmunoTherapy of Cancer, 2020, 8(1):e000205. (PMID: 32303611)
[71] ♦ Liu J#, Liu Z#, Wu Q#, Lu Y#, Wong C#, Miao L, Wang Y, Wang Z, Jin Y, He M, Ren C, Wang D, Chen D, Pu H, Feng L, Li B, Xie D, Zeng M, Huang P, Lin A, Lin D, Xu R, Ju H. Long Noncoding RNA AGPG Regulates PFKFB3-Mediated Tumor Glycolytic Reprogramming. Nature Communications, 2020, 11(1):1507. (PMID: 32198345)
[70] ♦ Liu Z, Chen M, Zhang Q, Zhang Y, An X, Luo Y, Liu X, Liu S, Liu Q, Yang T, Liu Y, Liu B, Zhou A, Li M, Liu Y, Liu Z, Zhong Q. ZIC2 is downregulated and represses tumor growth via the regulation of STAT3 in breast cancer. International Journal of Cancer, 2020, 147(2):505-518. (PMID: 32064600)
[69] ♦ Yang D, Chen Z, Yu K, Lu J, Wu Q, Wang Y, Ju H, Xu R, Liu Z, Zeng Z. METTL3 promotes the progression of gastric cancer via MYC target. Frontiers in Oncology, 2020, 10:115. (PMID: 32175271)
[68] ♦ Wang Y, Lu J, Wang F, Wang Y, He M, Wu Q, Lu Y, Yu H, Chen Z, Zhao Q, Liu J, Chen Y, Wang D, Sheng H, Liu Z, Zeng Z, Xu R, Ju H. Inhibition of fatty acid catabolism augments the efficacy of oxaliplatin-based chemotherapy in gastrointestinal cancers. Cancer Letters, 2020, 473:74-89. (PMID: 31904482)
[67] ♦ Wang Y, Lu J, Wu Q, Jin Y, Wang D, Chen Y, Liu J, Luo X, Meng Q, Pu H, Wang Y, Hu P, Liu Z, Zeng Z, Zhao Q, Deng R, Zhu X, Ju H, Xu R. LncRNA LINRIS stabilizes IGF2BP2 and promotes the aerobic glycolysis in colorectal cancer. Molecular Cancer, 2020, 18(1):174. (PMID: 31791342)
[66] ♦ Mei X, Qi D, Zhang T, Zhao Y, Jin L, Hou J, Wang J, Lin Y, Xue Y, Zhu P, Liu Z, Huang L, Nie J, Si W, Ma J, Ye J, Finnell RH, Saiyin H, Wang H, Zhao J, Zhao S, Xu W. Inhibiting MARSs reduces hyperhomocysteinemia-associated neural tube and congenital heart defects. EMBO Molecular Medicine, 2020, 12(3):e9469. (PMID: 32003121)
[65] ♦ Luo H, Zhao Q, Wei W, Zheng L, Yi S, Li G, Wang W, Sheng H, Pu H, Mo H, Zuo Z, Liu Z, Li C, Xie C, Zeng Z, Li W, Hao X, Liu Y, Cao S, Liu W, Gibson S, Zhang K, Xu G, Xu R. Circulating tumor DNA methylation profiles enable early diagnosis, prognosis prediction, and screening for colorectal cancer. Science Translational Medicine, 2020, 12(524):eaax7533. (PMID: 31894106)
[64] ♦ Zhu L, Cheng H, Peng G, Wang S, Zhang Z, Ni E, Fu X, Zhuang C, Liu Z, Zhou H. Ubiquitinome Profiling Reveals the Landscape of Ubiquitination Regulation in Rice Young Panicles. Genomics, Proteomics & Bioinformatics, 2020, 18(3):305-320. (PMID: 33147495)


[63] ♦ Zhang J, Bai R, Li M, Ye H, Wu C, Wang C, Li S, Tan L, Mai D, Li G, Pan L, Zheng Y, Su J, Ye Y, Fu Z, Zheng S, Zuo Z, Liu Z, Zhao Q, Che X, Xie D, Jia W, Zeng MS, Tan W, Chen R, Xu RH, Zheng J, Lin D. Excessive miR-25-3p maturation via N6-methyladenosine stimulated by cigarette smoke promotes pancreatic cancer progression. Nature Communications, 2019, 10(1):1858. (PMID: 31015415)
[62] ♦ He W, Liang B, Wang C, Li S, Zhao Y, Huang Q, Liu Z, Yao Z, Wu Q, Liao W, Zhang S, Liu Y, Xiang Y, Liu J, Shi M. MSC-regulated lncRNA MACC1-AS1 promotes stemness and chemoresistance through fatty acid oxidation in gastric cancer. Oncogene, 2019, 38(23):4637-4654. (PMID: 30742067)
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[1] ♦ Ren J, Liu Z, Gao X, Jin C, Ye M, Zou H, Wen L, Zhang Z, Xue Y, Yao X. MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore. Nucleic Acids Research, 2010, 38, D155-160. (PMID: 19783819)